RNA-Seq of Phytophthora fragariae isolate NOV-9 infecting Fragaria a... - SRA

SRX4620231: RNA-Seq of Phytophthora fragariae isolate NOV-9 infecting Fragaria ananassa: 72 hours post inoculation
1 ILLUMINA (Illumina HiSeq 4000) run: 173.9M spots, 52.2G bases, 19.8Gb downloads

Design: RNA extracted with CTAB method, sequenced externally by Novogene

Submitted by: NIAB-EMR Genetics, Genomics and Breeding (NIAB-EMR GGB)

Study: Isolates of two closely related phytophthora species causing either red core disease on Strawberry (P.fragariae) or Raspberry root rot (P.rubi). Genome sequencing and assembly

PRJNA396163 • SRP157056 • All experiments • All runs

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Investigating the genetic variation between isolates of two closely related pathogen species. By understanding the genetic controls of pathogenicity and variation in virulence phenotypes, the breeding of resistant varieties of the host crop plants can be aided. Comparisons between the two species can also be examined to understand the evolutionary history of these two pathogens and potentially shed light on the appearance of host specificity.

Sample:

SAMN07449687 • SRS3646518 • All experiments • All runs

Organism: Phytophthora fragariae

Library:

Name: NOV-9_72hpi_RNA

Instrument: Illumina HiSeq 4000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: RT-PCR

Layout: PAIRED

Runs: 1 run, 173.9M spots, 52.2G bases, 19.8Gb

Run	# of Spots	# of Bases	Size	Published
SRR7764607	173,856,460	52.2G	19.8Gb	2019-12-01

ID:: 6243379

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